task_categories:
- conversational
- fill-mask
language:
- en
tags:
- biology
- medical
pretty_name: genome database
size_categories:
- 10M<n<100M
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Dataset Description
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Dataset Summary
This dataset contains datas being collected from Genbank. The dataset is organized in a way that it separate all the genes from an DNA , and was classified according to the region and coding type. In that way, people could get more detailed information regarding each DNA sequences.
Supported Tasks and Leaderboards
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Languages
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Dataset Structure
Data Instances
{DNA id: AP013063.1
Organism: Serratia marcescens SM39
year: 2017
region type:coding
specific_class: Protein
Product:thr operon leader peptide
sequence: ATGCGCAACATCAGCCTGAAAACCACAATTATTACCACCACCGATACCACAGGTAACGGGGCGGGCTGA
gc_content:0.52173913
translation code: MRNISLKTTIITTTDTTGNGAG}
Data Fields
DNA id: id number for the whole DNA sequence, sequences with same DNA id are from same DNA
Organism: Organism of the DNA
year: the year of the DNA sequence
region type: determine the general type of the sequence, such as coding, regulator, repeat region, etc.
specific class: if the sequence is coding sequence, it would be classified according to their production type such as RNA, Protein. The regulators would also be classified by their own class such as terminator, ribosome
Product : if the sequence produce protein, the product name would be listed
sequence: the actual sequence
gc_content: the gc_content of the sequence
translation code: if the sequence produce protein, then the translation code would be provided as a reference
Data Splits
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Dataset Creation
Curation Rationale
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Source Data
The data collected are all from the most recent release of genbank, genbank 255.
Initial Data Collection and Normalization
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Who are the source language producers?
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Annotations
Annotation process
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Who are the annotators?
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Personal and Sensitive Information
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Considerations for Using the Data
Social Impact of Dataset
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Discussion of Biases
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Other Known Limitations
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Additional Information
Dataset Curators
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Licensing Information
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Citation Information
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Contributions
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