pantdipendra
commited on
Update app.py
Browse files
app.py
CHANGED
@@ -1,14 +1,24 @@
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import pickle
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import gradio as gr
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import numpy as np
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import pandas as pd
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import plotly.express as px
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df = pd.read_csv("X_train_Y_Train_merged_train.csv")
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######################################
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#
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######################################
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class ModelPredictor:
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def __init__(self, model_path, model_filenames):
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self.models = self.load_models()
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# Mapping from label column to human-readable strings for 0/1
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self.prediction_map = {
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"YOWRCONC": ["
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"YOSEEDOC": ["
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"YOWRHRS": ["
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"YO_MDEA5": ["Others
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"YOWRCHR": ["
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"YOWRLSIN": ["
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"YODPPROB": ["No other problems for 2+ weeks", "Had other problems for 2+ weeks"],
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"YOWRPROB": ["
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"YODPR2WK": ["No
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"YOWRDEPR": ["
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"YODPDISC": ["Mood not depressed overall", "Mood depressed overall (discrepancy)"],
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"YOLOSEV": ["Did not lose interest in
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"YOWRDCSN": ["
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"YODSMMDE": ["
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"YO_MDEA3": ["No appetite/weight changes", "
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"YODPLSIN": ["Never bored/lost interest", "
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"YOWRELES": ["Did not eat less", "Ate less than usual"],
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"YODSCEV": ["Fewer severe symptoms", "More severe symptoms"],
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"YOPB2WK": ["No uneasy feelings
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"YO_MDEA2": ["No issues physical/mental
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}
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def load_models(self):
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models = []
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for
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filepath = self.model_path +
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with open(filepath,
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return models
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def make_predictions(self, user_input):
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for
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return
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def get_majority_vote(self, predictions):
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"""Flatten all predictions and find 0 or 1 with majority."""
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combined = np.concatenate(predictions)
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def evaluate_severity(self, majority_vote_count):
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if majority_vote_count >= 13:
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return "Mental
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elif majority_vote_count >= 9:
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return "Mental
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elif majority_vote_count >= 5:
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return "Mental
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else:
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return "Mental
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######################################
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# 2) CONFIGURATIONS
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######################################
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model_filenames = [
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"YOWRCONC.pkl", "YOSEEDOC.pkl", "YO_MDEA5.pkl", "YOWRLSIN.pkl",
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"YODPPROB.pkl", "YOWRPROB.pkl", "YODPR2WK.pkl", "YOWRDEPR.pkl",
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"YODPDISC.pkl", "YOLOSEV.pkl", "YOWRDCSN.pkl", "YODSMMDE.pkl",
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"YO_MDEA3.pkl", "YODPLSIN.pkl", "YOWRELES.pkl", "YOPB2WK.pkl"
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]
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model_path = "models/"
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predictor = ModelPredictor(model_path, model_filenames)
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######################################
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# 3)
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######################################
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def validate_inputs(*args):
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# Just ensure all required (non-co-occurrence) fields are picked
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for arg in args:
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if arg == '' or arg is None:
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return False
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return True
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######################################
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# 4)
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######################################
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def predict(
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# Original required features
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YMDEYR, YMDERSUD5ANY, YMDEIMAD5YR, YMIMS5YANY, YMDELT, YMDEHARX,
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YMDEHPRX, YMDETXRX, YMDEHPO, YMDEAUD5YR, YMIMI5YANY, YMIUD5YANY,
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YMDESUD5ANYO, YNURSMDE, YSOCMDE, YCOUNMDE, YPSY1MDE, YPSY2MDE,
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YHLTMDE, YDOCMDE, YTXMDEYR, YUSUITHKYR, YUSUIPLNYR, YUSUITHK,
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YUSUIPLN, MDEIMPY, LVLDIFMEM2, YMSUD5YANY, YRXMDEYR
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# **New** optional picks for co-occurrence
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co_occ_feature1, co_occ_feature2, co_occ_label
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):
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"""
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Main function that:
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- Predicts with the 16 models
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- Aggregates results
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- Produces severity
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- Returns distribution & bar charts
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- Finds K=2 Nearest Neighbors
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- Produces *one* co-occurrence plot based on user-chosen columns
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"""
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# 1) Build user_input for models
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user_input_data = {
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'YNURSMDE': [int(YNURSMDE)],
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'YMDEYR': [int(YMDEYR)],
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}
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user_input = pd.DataFrame(user_input_data)
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#
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predictions = predictor.make_predictions(user_input)
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majority_vote = predictor.get_majority_vote(predictions)
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}
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group_map = {
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"Concentration_and_Decision_Making": ["YOWRCONC", "YOWRDCSN"],
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"Sleep_and_Energy_Levels": ["YOWRHRS", "YO_MDEA5", "YOWRELES", "YO_MDEA2"],
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"Mood_and_Emotional_State": ["YOWRCHR", "YOWRLSIN", "YOWRDEPR", "YODPDISC",
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"YODPR2WK", "YODSMMDE",
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"YOPB2WK"]
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}
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col_name
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if col_name in predictor.prediction_map and val in [0, 1]:
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text = predictor.prediction_map[col_name][val]
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out_line = f"{col_name}: {text}"
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else:
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placed = True
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break
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if not
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#
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pass
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for
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if
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if
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# 4) Additional Features
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# A) Total patient count
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total_patients = len(df)
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"### Total Patient Count\
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f"**{total_patients}** total patients in the dataset."
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)
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# B) Bar chart of how many have same inputs
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input_counts = {}
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for c in user_input_data.keys():
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v = user_input_data[c][0]
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input_counts[c] = len(df[df[c] == v])
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df_input_counts = pd.DataFrame({"Feature": list(input_counts.keys()), "Count": list(input_counts.values())})
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fig_input_bar = px.bar(
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df_input_counts,
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x="Feature",
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y="Count",
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title="Number of Patients with the Same Value for Each Input Feature"
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)
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fig_input_bar.update_layout(xaxis={"categoryorder": "total descending"})
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#
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label_counts = {}
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if
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df_label_counts,
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x="Label Column",
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y="Count",
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title="Number of Patients with the Same Predicted Label"
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)
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else:
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#
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if feat not in df.columns:
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continue
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for
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if
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continue
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if
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big_dist_df = pd.concat(
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fig_dist = px.bar(
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)
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fig_dist.update_layout(height=700)
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else:
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fig_dist = px.bar(title="No distribution plot generated (columns not found).")
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# E) Nearest Neighbors with K=2
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# We keep K=2, but for *all* label columns, we show their actual 0/1 or mapped text
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# (same approach as before).
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# ... [omitted here for brevity, or replicate your existing code for K=2 nearest neighbors] ...
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# We'll do a short version to keep focus on co-occ:
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# ---------------------------------------------------------------------
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# Build Hamming distance across user_input columns
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columns_for_distance = list(user_input.columns)
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sub_df = df[columns_for_distance].copy()
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user_row = user_input.iloc[0]
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distances = []
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for idx, row_ in sub_df.iterrows():
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dist_ = sum(row_[col] != user_row[col] for col in columns_for_distance)
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distances.append(dist_)
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df_dist = df.copy()
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df_dist["distance"] = distances
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# Sort ascending, pick K=2
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K = 2
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nearest_neighbors = df_dist.sort_values("distance", ascending=True).head(K)
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# Summarize in Markdown
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nn_md = ["### Nearest Neighbors (K=2)"]
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nn_md.append("(In a real application, you'd refine which features matter, how to encode them, etc.)\n")
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for irow in nearest_neighbors.itertuples():
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nn_md.append(f"- **Neighbor ID {irow.Index}**: distance={irow.distance}")
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nn_md_str = "\n".join(nn_md)
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# F) Co-occurrence Plot for user-chosen feature1, feature2, label
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# If the user picks "None" or doesn't pick valid columns, skip or fallback.
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if (co_occ_feature1 is not None and co_occ_feature1 != "None" and
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co_occ_feature2 is not None and co_occ_feature2 != "None" and
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co_occ_label is not None and co_occ_label != "None"):
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# Check if these columns are in df
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if (co_occ_feature1 in df.columns and
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co_occ_feature2 in df.columns and
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co_occ_label in df.columns):
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# Group by [co_occ_feature1, co_occ_feature2, co_occ_label]
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co_data = df.groupby([co_occ_feature1, co_occ_feature2, co_occ_label]).size().reset_index(name="count")
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fig_co_occ = px.bar(
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co_data,
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x=co_occ_feature1,
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y="count",
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color=co_occ_label,
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facet_col=co_occ_feature2,
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title=f"Co-occurrence: {co_occ_feature1} & {co_occ_feature2} vs {co_occ_label}"
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)
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else:
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fig_co_occ = px.bar(title="One or more selected columns not found in dataframe.")
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else:
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#
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return (
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severity,
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fig_dist,
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)
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######################################
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# 5)
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######################################
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input_mapping = {
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'YNURSMDE': {"Yes": 1, "No": 0},
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'YMDEYR': {"Yes": 1, "No": 2},
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'YSOCMDE': {"Yes": 1, "No": 0},
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'YMDESUD5ANYO': {"SUD only": 1, "MDE only": 2, "SUD
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'YMSUD5YANY': {"Yes": 1, "No": 0},
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'YUSUITHK': {"Yes": 1, "No": 2, "
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'YMDETXRX': {"Yes": 1, "No": 0},
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'YUSUITHKYR': {"Yes": 1, "No": 2, "
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'YMDERSUD5ANY': {"Yes": 1, "No": 0},
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'YUSUIPLNYR': {"Yes": 1, "No": 2, "
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'YCOUNMDE': {"Yes": 1, "No": 0},
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'YPSY1MDE': {"Yes": 1, "No": 0},
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'YHLTMDE': {"Yes": 1, "No": 0},
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'YDOCMDE': {"Yes": 1, "No": 0},
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'YPSY2MDE': {"Yes": 1, "No": 0},
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'YMDEHARX': {"Yes": 1, "No": 0},
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'LVLDIFMEM2': {"No Difficulty": 1, "Some
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'MDEIMPY': {"Yes": 1, "No": 2},
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'YMDEHPO': {"Yes": 1, "No": 0},
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'YMIMS5YANY': {"Yes": 1, "No": 0},
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'YMIUD5YANY': {"Yes": 1, "No": 0},
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'YMDEHPRX': {"Yes": 1, "No": 0},
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'YMIMI5YANY': {"Yes": 1, "No": 0},
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'YUSUIPLN': {"Yes": 1, "No": 2, "
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'YTXMDEYR': {"Yes": 1, "No": 0},
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'YMDEAUD5YR': {"Yes": 1, "No": 0},
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'YRXMDEYR': {"Yes": 1, "No": 0},
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}
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######################################
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# 6)
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######################################
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gr.Dropdown(list(input_mapping['YPSY1MDE'].keys()), label="YPSY1MDE: Psychologist?"),
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gr.Dropdown(list(input_mapping['YPSY2MDE'].keys()), label="YPSY2MDE: Psychiatrist?"),
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gr.Dropdown(list(input_mapping['YHLTMDE'].keys()), label="YHLTMDE: Health Prof?"),
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gr.Dropdown(list(input_mapping['YDOCMDE'].keys()), label="YDOCMDE: GP/Family MD?"),
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gr.Dropdown(list(input_mapping['YTXMDEYR'].keys()), label="YTXMDEYR: Doctor/Health Prof?"),
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# Suicidal
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gr.Dropdown(list(input_mapping['YUSUITHKYR'].keys()), label="YUSUITHKYR: Serious Suicide Thoughts?"),
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gr.Dropdown(list(input_mapping['YUSUIPLNYR'].keys()), label="YUSUIPLNYR: Made Plans?"),
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gr.Dropdown(list(input_mapping['YUSUITHK'].keys()), label="YUSUITHK: Suicide Thoughts (12 mo)?"),
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gr.Dropdown(list(input_mapping['YUSUIPLN'].keys()), label="YUSUIPLN: Made Plans (12 mo)?"),
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# Impairments
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gr.Dropdown(list(input_mapping['MDEIMPY'].keys()), label="MDEIMPY: Severe Role Impairment?"),
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gr.Dropdown(list(input_mapping['LVLDIFMEM2'].keys()), label="LVLDIFMEM2: Difficulty Remembering/Concentrating?"),
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gr.Dropdown(list(input_mapping['YMSUD5YANY'].keys()), label="YMSUD5YANY: MDE + Substance?"),
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gr.Dropdown(list(input_mapping['YRXMDEYR'].keys()), label="YRXMDEYR: Used Meds for MDE (12 mo)?"),
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]
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# (B) The new co-occurrence inputs
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# We'll give them defaults of "None" to indicate no selection.
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all_cols = ["None"] + df.columns.tolist() # 'None' plus the actual columns from your df
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co_occ_feature1 = gr.Dropdown(all_cols, label="Co-Occ Feature 1", value="None")
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co_occ_feature2 = gr.Dropdown(all_cols, label="Co-Occ Feature 2", value="None")
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all_label_cols = ["None"] + list(predictor.prediction_map.keys()) # e.g., "YOWRCONC", "YOWRHRS", ...
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co_occ_label = gr.Dropdown(all_label_cols, label="Co-Occ Label", value="None")
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# Combine them into a single input list
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inputs = original_inputs + [co_occ_feature1, co_occ_feature2, co_occ_label]
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# 8 outputs as before
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outputs = [
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gr.Textbox(label="Prediction Results", lines=15),
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gr.Textbox(label="Mental Health Severity", lines=2),
|
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gr.Markdown(label="Total Patient Count"),
|
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gr.Plot(label="Distribution Plot (Sample)"),
|
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gr.Markdown(label="Nearest Neighbors (K=2)"),
|
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gr.Plot(label="Co-occurrence Plot"),
|
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gr.Plot(label="Same Value Bar (Inputs)"),
|
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gr.Plot(label="Predicted Label Bar")
|
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-
]
|
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|
451 |
######################################
|
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-
# 7)
|
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######################################
|
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)
|
482 |
-
|
483 |
-
# Map to numeric
|
484 |
-
user_inputs = {
|
485 |
-
'YNURSMDE': input_mapping['YNURSMDE'][YNURSMDE],
|
486 |
-
'YMDEYR': input_mapping['YMDEYR'][YMDEYR],
|
487 |
-
'YSOCMDE': input_mapping['YSOCMDE'][YSOCMDE],
|
488 |
-
'YMDESUD5ANYO': input_mapping['YMDESUD5ANYO'][YMDESUD5ANYO],
|
489 |
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'YMSUD5YANY': input_mapping['YMSUD5YANY'][YMSUD5YANY],
|
490 |
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'YUSUITHK': input_mapping['YUSUITHK'][YUSUITHK],
|
491 |
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'YMDETXRX': input_mapping['YMDETXRX'][YMDETXRX],
|
492 |
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'YUSUITHKYR': input_mapping['YUSUITHKYR'][YUSUITHKYR],
|
493 |
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'YMDERSUD5ANY': input_mapping['YMDERSUD5ANY'][YMDERSUD5ANY],
|
494 |
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'YUSUIPLNYR': input_mapping['YUSUIPLNYR'][YUSUIPLNYR],
|
495 |
-
'YCOUNMDE': input_mapping['YCOUNMDE'][YCOUNMDE],
|
496 |
-
'YPSY1MDE': input_mapping['YPSY1MDE'][YPSY1MDE],
|
497 |
-
'YHLTMDE': input_mapping['YHLTMDE'][YHLTMDE],
|
498 |
-
'YDOCMDE': input_mapping['YDOCMDE'][YDOCMDE],
|
499 |
-
'YPSY2MDE': input_mapping['YPSY2MDE'][YPSY2MDE],
|
500 |
-
'YMDEHARX': input_mapping['YMDEHARX'][YMDEHARX],
|
501 |
-
'LVLDIFMEM2': input_mapping['LVLDIFMEM2'][LVLDIFMEM2],
|
502 |
-
'MDEIMPY': input_mapping['MDEIMPY'][MDEIMPY],
|
503 |
-
'YMDEHPO': input_mapping['YMDEHPO'][YMDEHPO],
|
504 |
-
'YMIMS5YANY': input_mapping['YMIMS5YANY'][YMIMS5YANY],
|
505 |
-
'YMDEIMAD5YR': input_mapping['YMDEIMAD5YR'][YMDEIMAD5YR],
|
506 |
-
'YMIUD5YANY': input_mapping['YMIUD5YANY'][YMIUD5YANY],
|
507 |
-
'YMDEHPRX': input_mapping['YMDEHPRX'][YMDEHPRX],
|
508 |
-
'YMIMI5YANY': input_mapping['YMIMI5YANY'][YMIMI5YANY],
|
509 |
-
'YUSUIPLN': input_mapping['YUSUIPLN'][YUSUIPLN],
|
510 |
-
'YTXMDEYR': input_mapping['YTXMDEYR'][YTXMDEYR],
|
511 |
-
'YMDEAUD5YR': input_mapping['YMDEAUD5YR'][YMDEAUD5YR],
|
512 |
-
'YRXMDEYR': input_mapping['YRXMDEYR'][YRXMDEYR],
|
513 |
-
'YMDELT': input_mapping['YMDELT'][YMDELT]
|
514 |
-
}
|
515 |
-
|
516 |
-
# Call the core predict function with the co-occ choices as well
|
517 |
-
return predict(
|
518 |
-
**user_inputs,
|
519 |
-
co_occ_feature1=co_occ_feature1,
|
520 |
-
co_occ_feature2=co_occ_feature2,
|
521 |
-
co_occ_label=co_occ_label
|
522 |
-
)
|
523 |
|
|
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|
524 |
|
|
|
525 |
custom_css = """
|
526 |
-
.gradio-container
|
527 |
-
|
528 |
-
|
|
|
|
|
529 |
"""
|
530 |
|
531 |
-
|
532 |
-
|
533 |
-
inputs=inputs,
|
534 |
-
outputs=outputs,
|
535 |
-
title="Mental Health Screening (NSDUH) with Selective Co-Occurrence",
|
536 |
-
css=custom_css,
|
537 |
-
description="""
|
538 |
-
**Instructions**:
|
539 |
-
1. Fill out all required fields regarding MDE/Substance Use/Consultations/Suicidal/Impairments.
|
540 |
-
2. (Optional) Choose 2 features and 1 label for the *Co-occurrence* plot.
|
541 |
-
- If you do not select them (or leave them as "None"), that plot will be skipped.
|
542 |
-
3. Click "Submit" to get predictions, severity, distribution plots, nearest neighbors, and your custom co-occurrence chart.
|
543 |
-
"""
|
544 |
-
)
|
545 |
-
|
546 |
-
if __name__ == "__main__":
|
547 |
-
interface.launch()
|
|
|
1 |
import pickle
|
|
|
2 |
import numpy as np
|
3 |
import pandas as pd
|
4 |
import plotly.express as px
|
5 |
+
import gradio as gr
|
6 |
|
7 |
+
######################################
|
8 |
+
# 1) Load Data & Prepare
|
9 |
+
######################################
|
10 |
df = pd.read_csv("X_train_Y_Train_merged_train.csv")
|
11 |
|
12 |
+
model_filenames = [
|
13 |
+
"YOWRCONC.pkl", "YOSEEDOC.pkl", "YO_MDEA5.pkl", "YOWRLSIN.pkl",
|
14 |
+
"YODPPROB.pkl", "YOWRPROB.pkl", "YODPR2WK.pkl", "YOWRDEPR.pkl",
|
15 |
+
"YODPDISC.pkl", "YOLOSEV.pkl", "YOWRDCSN.pkl", "YODSMMDE.pkl",
|
16 |
+
"YO_MDEA3.pkl", "YODPLSIN.pkl", "YOWRELES.pkl", "YOPB2WK.pkl"
|
17 |
+
]
|
18 |
+
model_path = "models/"
|
19 |
+
|
20 |
######################################
|
21 |
+
# 2) Model Predictor
|
22 |
######################################
|
23 |
class ModelPredictor:
|
24 |
def __init__(self, model_path, model_filenames):
|
|
|
27 |
self.models = self.load_models()
|
28 |
# Mapping from label column to human-readable strings for 0/1
|
29 |
self.prediction_map = {
|
30 |
+
"YOWRCONC": ["Did not have difficulty concentrating", "Had difficulty concentrating"],
|
31 |
+
"YOSEEDOC": ["Did not feel the need to see a doctor", "Felt the need to see a doctor"],
|
32 |
+
"YOWRHRS": ["Did not have trouble sleeping", "Had trouble sleeping"],
|
33 |
+
"YO_MDEA5": ["Others did not notice restlessness/lethargy", "Others noticed restlessness/lethargy"],
|
34 |
+
"YOWRCHR": ["Did not feel so sad", "Felt so sad nothing could cheer up"],
|
35 |
+
"YOWRLSIN": ["Did not feel bored and lose interest", "Felt bored and lost interest"],
|
36 |
"YODPPROB": ["No other problems for 2+ weeks", "Had other problems for 2+ weeks"],
|
37 |
+
"YOWRPROB": ["Did not have the worst time ever feeling", "Had the worst time ever feeling"],
|
38 |
+
"YODPR2WK": ["No periods of 2+ weeks feelings", "Had periods of 2+ weeks feelings"],
|
39 |
+
"YOWRDEPR": ["Did not feel depressed mostly everyday", "Felt depressed mostly everyday"],
|
40 |
"YODPDISC": ["Mood not depressed overall", "Mood depressed overall (discrepancy)"],
|
41 |
+
"YOLOSEV": ["Did not lose interest in enjoyable things", "Lost interest in enjoyable things"],
|
42 |
+
"YOWRDCSN": ["Was able to make decisions", "Was unable to make decisions"],
|
43 |
+
"YODSMMDE": ["Never had depression for 2+ weeks", "Had depression for 2+ weeks"],
|
44 |
+
"YO_MDEA3": ["No appetite/weight changes", "Had appetite/weight changes"],
|
45 |
+
"YODPLSIN": ["Never bored/lost interest", "Felt bored/lost interest"],
|
46 |
+
"YOWRELES": ["Did not eat less than usual", "Ate less than usual"],
|
47 |
"YODSCEV": ["Fewer severe symptoms", "More severe symptoms"],
|
48 |
+
"YOPB2WK": ["No uneasy feelings 2+ weeks", "Had uneasy feelings 2+ weeks"],
|
49 |
+
"YO_MDEA2": ["No issues w/ physical/mental well-being", "Issues w/ physical/mental well-being"]
|
50 |
}
|
51 |
|
52 |
def load_models(self):
|
53 |
models = []
|
54 |
+
for filename in model_filenames:
|
55 |
+
filepath = self.model_path + filename
|
56 |
+
with open(filepath, 'rb') as file:
|
57 |
+
model = pickle.load(file)
|
58 |
+
models.append(model)
|
59 |
return models
|
60 |
|
61 |
def make_predictions(self, user_input):
|
62 |
+
# Each model => returns array of [0] or [1]
|
63 |
+
predictions = []
|
64 |
+
for model in self.models:
|
65 |
+
pred = model.predict(user_input)
|
66 |
+
predictions.append(pred.flatten())
|
67 |
+
return predictions
|
68 |
|
69 |
def get_majority_vote(self, predictions):
|
|
|
70 |
combined = np.concatenate(predictions)
|
71 |
+
# 0 or 1 with highest frequency
|
72 |
+
majority_vote = np.bincount(combined).argmax()
|
73 |
+
return majority_vote
|
74 |
|
75 |
def evaluate_severity(self, majority_vote_count):
|
76 |
+
# Simple threshold approach
|
77 |
if majority_vote_count >= 13:
|
78 |
+
return "Mental Health Severity: Severe"
|
79 |
elif majority_vote_count >= 9:
|
80 |
+
return "Mental Health Severity: Moderate"
|
81 |
elif majority_vote_count >= 5:
|
82 |
+
return "Mental Health Severity: Low"
|
83 |
else:
|
84 |
+
return "Mental Health Severity: Very Low"
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
85 |
|
86 |
######################################
|
87 |
+
# 3) Validate Inputs
|
88 |
######################################
|
89 |
def validate_inputs(*args):
|
|
|
90 |
for arg in args:
|
91 |
if arg == '' or arg is None:
|
92 |
return False
|
93 |
return True
|
94 |
|
95 |
######################################
|
96 |
+
# 4) Core Prediction
|
97 |
######################################
|
98 |
+
predictor = ModelPredictor(model_path, model_filenames)
|
99 |
+
|
100 |
def predict(
|
|
|
101 |
YMDEYR, YMDERSUD5ANY, YMDEIMAD5YR, YMIMS5YANY, YMDELT, YMDEHARX,
|
102 |
YMDEHPRX, YMDETXRX, YMDEHPO, YMDEAUD5YR, YMIMI5YANY, YMIUD5YANY,
|
103 |
YMDESUD5ANYO, YNURSMDE, YSOCMDE, YCOUNMDE, YPSY1MDE, YPSY2MDE,
|
104 |
YHLTMDE, YDOCMDE, YTXMDEYR, YUSUITHKYR, YUSUIPLNYR, YUSUITHK,
|
105 |
+
YUSUIPLN, MDEIMPY, LVLDIFMEM2, YMSUD5YANY, YRXMDEYR
|
|
|
|
|
106 |
):
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
107 |
user_input_data = {
|
108 |
'YNURSMDE': [int(YNURSMDE)],
|
109 |
'YMDEYR': [int(YMDEYR)],
|
|
|
137 |
}
|
138 |
user_input = pd.DataFrame(user_input_data)
|
139 |
|
140 |
+
# 1) Predict
|
141 |
predictions = predictor.make_predictions(user_input)
|
142 |
+
|
143 |
+
# 2) Majority vote
|
144 |
majority_vote = predictor.get_majority_vote(predictions)
|
145 |
+
|
146 |
+
# 3) Count how many are '1'
|
147 |
+
num_ones = sum(np.concatenate(predictions) == 1)
|
148 |
+
|
149 |
+
# 4) Severity
|
150 |
+
severity = predictor.evaluate_severity(num_ones)
|
151 |
+
|
152 |
+
# 5) Grouped textual results
|
153 |
+
# [Same grouping logic as before, or adapt as needed]
|
154 |
+
groups = {
|
|
|
|
|
155 |
"Concentration_and_Decision_Making": ["YOWRCONC", "YOWRDCSN"],
|
156 |
"Sleep_and_Energy_Levels": ["YOWRHRS", "YO_MDEA5", "YOWRELES", "YO_MDEA2"],
|
157 |
"Mood_and_Emotional_State": ["YOWRCHR", "YOWRLSIN", "YOWRDEPR", "YODPDISC",
|
|
|
161 |
"YODPR2WK", "YODSMMDE",
|
162 |
"YOPB2WK"]
|
163 |
}
|
164 |
+
grouped_text = {k: [] for k in groups}
|
165 |
+
for i, pred in enumerate(predictions):
|
166 |
+
col_name = model_filenames[i].split('.')[0]
|
167 |
+
pred_val = pred[0]
|
168 |
+
if col_name in predictor.prediction_map and pred_val in [0,1]:
|
169 |
+
text_val = predictor.prediction_map[col_name][pred_val]
|
|
|
|
|
|
|
170 |
else:
|
171 |
+
text_val = f"Prediction={pred_val}"
|
172 |
+
# Find which group
|
173 |
+
assigned = False
|
174 |
+
for gname, gcols in groups.items():
|
175 |
+
if col_name in gcols:
|
176 |
+
grouped_text[gname].append(f"{col_name} => {text_val}")
|
177 |
+
assigned = True
|
|
|
178 |
break
|
179 |
+
if not assigned:
|
180 |
+
# Or skip
|
181 |
pass
|
182 |
|
183 |
+
final_str = []
|
184 |
+
for gname, items in grouped_text.items():
|
185 |
+
if items:
|
186 |
+
final_str.append(f"**{gname.replace('_',' ')}**")
|
187 |
+
final_str.append("\n".join(items))
|
188 |
+
final_str.append("\n")
|
189 |
+
final_str = "\n".join(final_str).strip()
|
190 |
+
if not final_str:
|
191 |
+
final_str = "No predictions made. Please check inputs."
|
192 |
+
|
193 |
+
# 6) Additional charts: total patients, distribution for input features, etc.
|
|
|
|
|
|
|
194 |
total_patients = len(df)
|
195 |
+
total_patient_markdown = (
|
196 |
+
f"### Total Patient Count\nThere are **{total_patients}** patients in the dataset."
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
197 |
)
|
|
|
198 |
|
199 |
+
# A) Bar chart for input features
|
200 |
+
same_val_counts = {}
|
201 |
+
for col, val_list in user_input_data.items():
|
202 |
+
val_ = val_list[0]
|
203 |
+
same_val_counts[col] = len(df[df[col] == val_])
|
204 |
+
bar_input_df = pd.DataFrame({"Feature": list(same_val_counts.keys()),
|
205 |
+
"Count": list(same_val_counts.values())})
|
206 |
+
fig_bar_input = px.bar(bar_input_df, x="Feature", y="Count",
|
207 |
+
title="Number of Patients with Same Input Feature Values")
|
208 |
+
fig_bar_input.update_layout(width=800, height=500)
|
209 |
+
|
210 |
+
# B) Bar chart for predicted labels
|
211 |
label_counts = {}
|
212 |
+
all_preds_flat = np.concatenate(predictions)
|
213 |
+
for i, arr in enumerate(predictions):
|
214 |
+
lbl_col = model_filenames[i].split('.')[0]
|
215 |
+
pred_val = arr[0]
|
216 |
+
if pred_val in [0,1]:
|
217 |
+
label_counts[lbl_col] = len(df[df[lbl_col] == pred_val])
|
218 |
+
if label_counts:
|
219 |
+
bar_label_df = pd.DataFrame({"Label": list(label_counts.keys()),
|
220 |
+
"Count": list(label_counts.values())})
|
221 |
+
fig_bar_labels = px.bar(bar_label_df, x="Label", y="Count",
|
222 |
+
title="Number of Patients with the Same Predicted Label")
|
223 |
+
fig_bar_labels.update_layout(width=800, height=500)
|
|
|
|
|
|
|
|
|
|
|
224 |
else:
|
225 |
+
fig_bar_labels = px.bar(title="No valid predicted labels to display.")
|
226 |
+
fig_bar_labels.update_layout(width=800, height=500)
|
227 |
+
|
228 |
+
# C) Distribution Plot (small sample)
|
229 |
+
# We'll pick the first 4 user_input columns & first 3 labels
|
230 |
+
subset_input_cols = list(user_input_data.keys())[:4]
|
231 |
+
subset_labels = [fn.split('.')[0] for fn in model_filenames[:3]]
|
232 |
+
dist_rows = []
|
233 |
+
for feat in subset_input_cols:
|
234 |
if feat not in df.columns:
|
235 |
continue
|
236 |
+
for label_col in subset_labels:
|
237 |
+
if label_col not in df.columns:
|
238 |
continue
|
239 |
+
tmp = df.groupby([feat, label_col]).size().reset_index(name="count")
|
240 |
+
tmp["feature"] = feat
|
241 |
+
tmp["label"] = label_col
|
242 |
+
dist_rows.append(tmp)
|
243 |
+
if dist_rows:
|
244 |
+
big_dist_df = pd.concat(dist_rows, ignore_index=True)
|
245 |
+
fig_dist = px.bar(big_dist_df,
|
246 |
+
x=big_dist_df.columns[0],
|
247 |
+
y="count",
|
248 |
+
color=big_dist_df.columns[1],
|
249 |
+
facet_row="feature",
|
250 |
+
facet_col="label",
|
251 |
+
title="Distribution of Sample Input Features vs. Sample Predicted Labels")
|
252 |
+
fig_dist.update_layout(width=1000, height=700)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
253 |
else:
|
254 |
+
fig_dist = px.bar(title="Distribution plot not generated.")
|
255 |
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256 |
+
# D) Nearest Neighbors (K=2) [Optional as before]
|
257 |
+
# ... omitted for brevity if you want to keep from prior code ...
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258 |
+
# or keep it.
|
259 |
+
# For now, let's produce an empty markdown
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260 |
+
nearest_neighbors_markdown = "Nearest neighbors omitted here for brevity..."
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261 |
+
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262 |
+
# We won't produce a default co-occurrence plot here, since we do it in a separate tab.
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+
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264 |
+
# Return 8 items
|
265 |
return (
|
266 |
+
final_str,
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267 |
+
severity,
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268 |
+
total_patient_markdown,
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+
fig_dist,
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270 |
+
nearest_neighbors_markdown,
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271 |
+
None, # placeholder for a single co-occurrence plot
|
272 |
+
fig_bar_input,
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273 |
+
fig_bar_labels
|
274 |
)
|
275 |
|
276 |
######################################
|
277 |
+
# 5) Input Mapping
|
278 |
######################################
|
279 |
input_mapping = {
|
280 |
'YNURSMDE': {"Yes": 1, "No": 0},
|
281 |
'YMDEYR': {"Yes": 1, "No": 2},
|
282 |
'YSOCMDE': {"Yes": 1, "No": 0},
|
283 |
+
'YMDESUD5ANYO': {"SUD only, no MDE": 1, "MDE only, no SUD": 2, "SUD and MDE": 3, "Neither SUD or MDE": 4},
|
284 |
'YMSUD5YANY': {"Yes": 1, "No": 0},
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285 |
+
'YUSUITHK': {"Yes": 1, "No": 2, "I'm not sure": 3, "I don't want to answer": 4},
|
286 |
'YMDETXRX': {"Yes": 1, "No": 0},
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287 |
+
'YUSUITHKYR': {"Yes": 1, "No": 2, "I'm not sure": 3, "I don't want to answer": 4},
|
288 |
'YMDERSUD5ANY': {"Yes": 1, "No": 0},
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289 |
+
'YUSUIPLNYR': {"Yes": 1, "No": 2, "I'm not sure": 3, "I don't want to answer": 4},
|
290 |
'YCOUNMDE': {"Yes": 1, "No": 0},
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291 |
'YPSY1MDE': {"Yes": 1, "No": 0},
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292 |
'YHLTMDE': {"Yes": 1, "No": 0},
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293 |
'YDOCMDE': {"Yes": 1, "No": 0},
|
294 |
'YPSY2MDE': {"Yes": 1, "No": 0},
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295 |
'YMDEHARX': {"Yes": 1, "No": 0},
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296 |
+
'LVLDIFMEM2': {"No Difficulty": 1, "Some difficulty": 2, "A lot of difficulty or cannot do at all": 3},
|
297 |
'MDEIMPY': {"Yes": 1, "No": 2},
|
298 |
'YMDEHPO': {"Yes": 1, "No": 0},
|
299 |
'YMIMS5YANY': {"Yes": 1, "No": 0},
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301 |
'YMIUD5YANY': {"Yes": 1, "No": 0},
|
302 |
'YMDEHPRX': {"Yes": 1, "No": 0},
|
303 |
'YMIMI5YANY': {"Yes": 1, "No": 0},
|
304 |
+
'YUSUIPLN': {"Yes": 1, "No": 2, "I'm not sure": 3, "I don't want to answer": 4},
|
305 |
'YTXMDEYR': {"Yes": 1, "No": 0},
|
306 |
'YMDEAUD5YR': {"Yes": 1, "No": 0},
|
307 |
'YRXMDEYR': {"Yes": 1, "No": 0},
|
|
|
309 |
}
|
310 |
|
311 |
######################################
|
312 |
+
# 6) Co-Occurrence Function (Separate)
|
313 |
######################################
|
314 |
+
def co_occurrence_plot(feature1, feature2, label_col):
|
315 |
+
"""
|
316 |
+
Generate a single co-occurrence bar chart grouping by [feature1, feature2, label_col].
|
317 |
+
We set a custom width/height so it's clearly visible.
|
318 |
+
"""
|
319 |
+
if not feature1 or not feature2 or not label_col:
|
320 |
+
return px.bar(title="Please select all three fields.")
|
321 |
+
if feature1 not in df.columns or feature2 not in df.columns or label_col not in df.columns:
|
322 |
+
return px.bar(title="Selected columns not found in the dataset.")
|
323 |
+
|
324 |
+
# Group
|
325 |
+
grouped_df = df.groupby([feature1, feature2, label_col]).size().reset_index(name="count")
|
326 |
+
fig = px.bar(
|
327 |
+
grouped_df,
|
328 |
+
x=feature1,
|
329 |
+
y="count",
|
330 |
+
color=label_col,
|
331 |
+
facet_col=feature2,
|
332 |
+
title=f"Co-Occurrence Plot: {feature1} & {feature2} vs. {label_col}"
|
333 |
+
)
|
334 |
+
fig.update_layout(width=1000, height=600)
|
335 |
+
return fig
|
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|
336 |
|
337 |
######################################
|
338 |
+
# 7) Gradio with Tabs
|
339 |
######################################
|
340 |
+
with gr.Blocks(css=".gradio-container {max-width: 1200px;}") as demo:
|
341 |
+
|
342 |
+
with gr.Tab("Prediction"):
|
343 |
+
# Inputs (same order as function signature)
|
344 |
+
YMDEYR_dd = gr.Dropdown(list(input_mapping['YMDEYR'].keys()), label="YMDEYR")
|
345 |
+
YMDERSUD5ANY_dd = gr.Dropdown(list(input_mapping['YMDERSUD5ANY'].keys()), label="YMDERSUD5ANY")
|
346 |
+
YMDEIMAD5YR_dd = gr.Dropdown(list(input_mapping['YMDEIMAD5YR'].keys()), label="YMDEIMAD5YR")
|
347 |
+
YMIMS5YANY_dd = gr.Dropdown(list(input_mapping['YMIMS5YANY'].keys()), label="YMIMS5YANY")
|
348 |
+
YMDELT_dd = gr.Dropdown(list(input_mapping['YMDELT'].keys()), label="YMDELT")
|
349 |
+
YMDEHARX_dd = gr.Dropdown(list(input_mapping['YMDEHARX'].keys()), label="YMDEHARX")
|
350 |
+
YMDEHPRX_dd = gr.Dropdown(list(input_mapping['YMDEHPRX'].keys()), label="YMDEHPRX")
|
351 |
+
YMDETXRX_dd = gr.Dropdown(list(input_mapping['YMDETXRX'].keys()), label="YMDETXRX")
|
352 |
+
YMDEHPO_dd = gr.Dropdown(list(input_mapping['YMDEHPO'].keys()), label="YMDEHPO")
|
353 |
+
YMDEAUD5YR_dd = gr.Dropdown(list(input_mapping['YMDEAUD5YR'].keys()), label="YMDEAUD5YR")
|
354 |
+
YMIMI5YANY_dd = gr.Dropdown(list(input_mapping['YMIMI5YANY'].keys()), label="YMIMI5YANY")
|
355 |
+
YMIUD5YANY_dd = gr.Dropdown(list(input_mapping['YMIUD5YANY'].keys()), label="YMIUD5YANY")
|
356 |
+
YMDESUD5ANYO_dd = gr.Dropdown(list(input_mapping['YMDESUD5ANYO'].keys()), label="YMDESUD5ANYO")
|
357 |
+
|
358 |
+
# Consultations
|
359 |
+
YNURSMDE_dd = gr.Dropdown(list(input_mapping['YNURSMDE'].keys()), label="YNURSMDE")
|
360 |
+
YSOCMDE_dd = gr.Dropdown(list(input_mapping['YSOCMDE'].keys()), label="YSOCMDE")
|
361 |
+
YCOUNMDE_dd = gr.Dropdown(list(input_mapping['YCOUNMDE'].keys()), label="YCOUNMDE")
|
362 |
+
YPSY1MDE_dd = gr.Dropdown(list(input_mapping['YPSY1MDE'].keys()), label="YPSY1MDE")
|
363 |
+
YPSY2MDE_dd = gr.Dropdown(list(input_mapping['YPSY2MDE'].keys()), label="YPSY2MDE")
|
364 |
+
YHLTMDE_dd = gr.Dropdown(list(input_mapping['YHLTMDE'].keys()), label="YHLTMDE")
|
365 |
+
YDOCMDE_dd = gr.Dropdown(list(input_mapping['YDOCMDE'].keys()), label="YDOCMDE")
|
366 |
+
YTXMDEYR_dd = gr.Dropdown(list(input_mapping['YTXMDEYR'].keys()), label="YTXMDEYR")
|
367 |
+
|
368 |
+
# Suicidal thoughts/plans
|
369 |
+
YUSUITHKYR_dd = gr.Dropdown(list(input_mapping['YUSUITHKYR'].keys()), label="YUSUITHKYR")
|
370 |
+
YUSUIPLNYR_dd = gr.Dropdown(list(input_mapping['YUSUIPLNYR'].keys()), label="YUSUIPLNYR")
|
371 |
+
YUSUITHK_dd = gr.Dropdown(list(input_mapping['YUSUITHK'].keys()), label="YUSUITHK")
|
372 |
+
YUSUIPLN_dd = gr.Dropdown(list(input_mapping['YUSUIPLN'].keys()), label="YUSUIPLN")
|
373 |
+
|
374 |
+
# Impairments
|
375 |
+
MDEIMPY_dd = gr.Dropdown(list(input_mapping['MDEIMPY'].keys()), label="MDEIMPY")
|
376 |
+
LVLDIFMEM2_dd = gr.Dropdown(list(input_mapping['LVLDIFMEM2'].keys()), label="LVLDIFMEM2")
|
377 |
+
YMSUD5YANY_dd = gr.Dropdown(list(input_mapping['YMSUD5YANY'].keys()), label="YMSUD5YANY")
|
378 |
+
YRXMDEYR_dd = gr.Dropdown(list(input_mapping['YRXMDEYR'].keys()), label="YRXMDEYR")
|
379 |
+
|
380 |
+
# 8 outputs
|
381 |
+
out_pred_res = gr.Textbox(label="Prediction Results", lines=8)
|
382 |
+
out_sev = gr.Textbox(label="Mental Health Severity", lines=2)
|
383 |
+
out_count = gr.Markdown(label="Total Patient Count")
|
384 |
+
out_distplot = gr.Plot(label="Distribution Plot")
|
385 |
+
out_nn = gr.Markdown(label="Nearest Neighbors Summary")
|
386 |
+
out_cooc = gr.Plot(label="Co-occurrence Plot Placeholder")
|
387 |
+
out_bar_input = gr.Plot(label="Input Feature Counts")
|
388 |
+
out_bar_labels = gr.Plot(label="Predicted Label Counts")
|
389 |
+
|
390 |
+
# Button
|
391 |
+
predict_btn = gr.Button("Predict")
|
392 |
+
|
393 |
+
# Link button to the function
|
394 |
+
predict_btn.click(
|
395 |
+
fn=predict,
|
396 |
+
inputs=[
|
397 |
+
YMDEYR_dd, YMDERSUD5ANY_dd, YMDEIMAD5YR_dd, YMIMS5YANY_dd, YMDELT_dd, YMDEHARX_dd,
|
398 |
+
YMDEHPRX_dd, YMDETXRX_dd, YMDEHPO_dd, YMDEAUD5YR_dd, YMIMI5YANY_dd, YMIUD5YANY_dd,
|
399 |
+
YMDESUD5ANYO_dd, YNURSMDE_dd, YSOCMDE_dd, YCOUNMDE_dd, YPSY1MDE_dd, YPSY2MDE_dd,
|
400 |
+
YHLTMDE_dd, YDOCMDE_dd, YTXMDEYR_dd, YUSUITHKYR_dd, YUSUIPLNYR_dd, YUSUITHK_dd,
|
401 |
+
YUSUIPLN_dd, MDEIMPY_dd, LVLDIFMEM2_dd, YMSUD5YANY_dd, YRXMDEYR_dd
|
402 |
+
],
|
403 |
+
outputs=[
|
404 |
+
out_pred_res, out_sev, out_count, out_distplot, out_nn, out_cooc, out_bar_input, out_bar_labels
|
405 |
+
]
|
406 |
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
407 |
|
408 |
+
with gr.Tab("Co-occurrence"):
|
409 |
+
gr.Markdown("## Generate a Co-Occurrence Plot on Demand\nSelect two features and one label:")
|
410 |
+
with gr.Row():
|
411 |
+
feature1_dd = gr.Dropdown(sorted(df.columns), label="Feature 1")
|
412 |
+
feature2_dd = gr.Dropdown(sorted(df.columns), label="Feature 2")
|
413 |
+
label_dd = gr.Dropdown(sorted(df.columns), label="Label Column")
|
414 |
+
out_co_occ_plot = gr.Plot(label="Co-occurrence Plot")
|
415 |
+
|
416 |
+
co_occ_btn = gr.Button("Generate Plot")
|
417 |
+
|
418 |
+
# Link to co_occurrence_plot function
|
419 |
+
co_occ_btn.click(
|
420 |
+
fn=co_occurrence_plot,
|
421 |
+
inputs=[feature1_dd, feature2_dd, label_dd],
|
422 |
+
outputs=out_co_occ_plot
|
423 |
+
)
|
424 |
|
425 |
+
# Optional custom CSS for bigger container
|
426 |
custom_css = """
|
427 |
+
.gradio-container {
|
428 |
+
max-width: 1200px;
|
429 |
+
margin-left: auto;
|
430 |
+
margin-right: auto;
|
431 |
+
}
|
432 |
"""
|
433 |
|
434 |
+
# Launch
|
435 |
+
demo.launch(server_name="0.0.0.0", server_port=7860)
|
|
|
|
|
|
|
|
|
|
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|