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scvi-tools
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tabula-sapiens-skin-condscvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:CondSCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,10 +51,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 2.93 | 2.86 |
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  | Pearson Correlation | 0.45 | 0.44 |
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- | Spearman Correlation | 0.52 | 0.52 |
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- | R² (R-Squared) | -2.11 | -2.02 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 30.72 |
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  | Pearson Correlation | 0.26 |
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- | Spearman Correlation | 0.36 |
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- | R² (R-Squared) | -294.96 |
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  </details>
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@@ -83,27 +83,27 @@ cell-type.
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | stromal cell | 0.87 | 2.61 | 0.37 | 0.62 | 0.54 | 0.91 | 2943.00 |
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- | endothelial cell | 0.76 | 3.19 | 0.25 | 0.40 | 0.50 | 0.87 | 1309.00 |
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- | CD8-positive, alpha-beta memory T cell | 0.77 | 6.22 | 0.09 | 0.28 | 0.39 | 0.81 | 857.00 |
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- | macrophage | 0.68 | 4.27 | 0.09 | 0.25 | 0.41 | 0.86 | 846.00 |
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- | mast cell | 0.64 | 5.46 | 0.07 | 0.16 | 0.36 | 0.80 | 645.00 |
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- | mature NK T cell | 0.78 | 6.51 | 0.10 | 0.28 | 0.40 | 0.79 | 605.00 |
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- | T cell | 0.77 | 7.36 | 0.13 | 0.28 | 0.38 | 0.79 | 519.00 |
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- | muscle cell | 0.40 | 5.99 | 0.04 | 0.12 | 0.47 | 0.80 | 437.00 |
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- | CD4-positive, alpha-beta memory T cell | 0.79 | 8.29 | 0.14 | 0.23 | 0.40 | 0.77 | 339.00 |
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- | CD1c-positive myeloid dendritic cell | 0.60 | 8.62 | 0.08 | 0.18 | 0.44 | 0.86 | 165.00 |
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- | CD8-positive, alpha-beta cytotoxic T cell | 0.67 | 9.78 | 0.21 | 0.16 | 0.44 | 0.77 | 129.00 |
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- | regulatory T cell | 0.58 | 10.63 | 0.18 | 0.16 | 0.45 | 0.82 | 126.00 |
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- | epithelial cell | 0.27 | 7.67 | 0.04 | 0.07 | 0.51 | 0.74 | 106.00 |
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- | naive thymus-derived CD8-positive, alpha-beta T cell | 0.53 | 10.93 | 0.20 | 0.14 | 0.43 | 0.80 | 88.00 |
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- | naive thymus-derived CD4-positive, alpha-beta T cell | 0.70 | 9.66 | 0.27 | 0.20 | 0.43 | 0.77 | 71.00 |
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- | melanocyte | 0.19 | 10.14 | 0.15 | 0.08 | 0.47 | 0.75 | 64.00 |
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- | CD4-positive helper T cell | 0.68 | 10.82 | 0.22 | 0.16 | 0.44 | 0.79 | 59.00 |
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- | Langerhans cell | 0.42 | 11.04 | 0.18 | 0.16 | 0.47 | 0.78 | 36.00 |
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- | plasma cell | 0.06 | 11.31 | 0.15 | 0.05 | 0.51 | 0.81 | 24.00 |
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- | CD141-positive myeloid dendritic cell | 0.51 | 13.55 | 0.18 | 0.20 | 0.46 | 0.81 | 17.00 |
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- | smooth muscle cell | 0.24 | 9.06 | 0.31 | 0.18 | 0.43 | 0.70 | 13.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 2.94 | 2.88 |
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  | Pearson Correlation | 0.45 | 0.44 |
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+ | Spearman Correlation | 0.52 | 0.51 |
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+ | R² (R-Squared) | -2.09 | -2.02 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 30.71 |
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  | Pearson Correlation | 0.26 |
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+ | Spearman Correlation | 0.35 |
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+ | R² (R-Squared) | -296.23 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | stromal cell | 0.85 | 2.61 | 0.36 | 0.62 | 0.55 | 0.91 | 2943.00 |
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+ | endothelial cell | 0.76 | 3.18 | 0.26 | 0.40 | 0.52 | 0.88 | 1309.00 |
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+ | CD8-positive, alpha-beta memory T cell | 0.74 | 6.21 | 0.10 | 0.31 | 0.39 | 0.81 | 857.00 |
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+ | macrophage | 0.69 | 4.27 | 0.07 | 0.24 | 0.41 | 0.86 | 846.00 |
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+ | mast cell | 0.62 | 5.46 | 0.07 | 0.17 | 0.37 | 0.81 | 645.00 |
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+ | mature NK T cell | 0.78 | 6.51 | 0.10 | 0.28 | 0.39 | 0.79 | 605.00 |
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+ | T cell | 0.74 | 7.45 | 0.09 | 0.25 | 0.39 | 0.79 | 519.00 |
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+ | muscle cell | 0.36 | 6.02 | 0.01 | 0.12 | 0.48 | 0.81 | 437.00 |
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+ | CD4-positive, alpha-beta memory T cell | 0.79 | 8.15 | 0.17 | 0.25 | 0.40 | 0.77 | 339.00 |
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+ | CD1c-positive myeloid dendritic cell | 0.59 | 8.62 | 0.08 | 0.16 | 0.46 | 0.86 | 165.00 |
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+ | CD8-positive, alpha-beta cytotoxic T cell | 0.69 | 9.63 | 0.22 | 0.19 | 0.43 | 0.76 | 129.00 |
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+ | regulatory T cell | 0.53 | 10.58 | 0.18 | 0.17 | 0.44 | 0.82 | 126.00 |
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+ | epithelial cell | 0.27 | 7.64 | 0.07 | 0.12 | 0.48 | 0.73 | 106.00 |
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+ | naive thymus-derived CD8-positive, alpha-beta T cell | 0.58 | 10.71 | 0.22 | 0.15 | 0.44 | 0.80 | 88.00 |
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+ | naive thymus-derived CD4-positive, alpha-beta T cell | 0.70 | 9.99 | 0.24 | 0.17 | 0.45 | 0.78 | 71.00 |
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+ | melanocyte | 0.18 | 10.12 | 0.14 | 0.05 | 0.50 | 0.76 | 64.00 |
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+ | CD4-positive helper T cell | 0.65 | 10.64 | 0.24 | 0.18 | 0.41 | 0.78 | 59.00 |
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+ | Langerhans cell | 0.42 | 11.23 | 0.16 | 0.14 | 0.46 | 0.78 | 36.00 |
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+ | plasma cell | 0.04 | 11.42 | 0.14 | 0.04 | 0.51 | 0.81 | 24.00 |
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+ | CD141-positive myeloid dendritic cell | 0.54 | 13.30 | 0.19 | 0.18 | 0.46 | 0.82 | 17.00 |
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+ | smooth muscle cell | 0.30 | 9.79 | 0.25 | 0.10 | 0.46 | 0.72 | 13.00 |
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  </details>
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