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Update README.md
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README.md
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@@ -26,7 +26,8 @@ dataset = dataset.filter(lambda v: v["source"]=="ClinVar" or (v["source"]=="gnom
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Subset for comparing OMIM Pathogenic regulatory vs. gnomAD common (MAF > 5%) regulatory:
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```python
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-
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```
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Subset for comparing gnomAD rare vs. gnomAD common (MAF > 1%):
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Subset for comparing OMIM Pathogenic regulatory vs. gnomAD common (MAF > 5%) regulatory:
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```python
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cs = ["5_prime_UTR", "upstream_gene", "intergenic", "3_prime_UTR", "non_coding_transcript_exon"]
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dataset = dataset.filter(lambda v: v["source"]=="OMIM" or (v["source"]=="gnomAD" and "missense" not in v["consequence"] and any([c in v["consequence"] for c in cs]) and v["MAF"] > 5/100))
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```
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Subset for comparing gnomAD rare vs. gnomAD common (MAF > 1%):
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