DNABERT2_pretrain / environment.yml
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name: dnabert2
channels:
- defaults
- conda-forge
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- ca-certificates=2024.12.14
- git-lfs=3.6.0
- ld_impl_linux-64=2.40
- libffi=3.4.4
- libgcc=14.2.0
- libgcc-ng=14.2.0
- libgomp=14.2.0
- libstdcxx-ng=11.2.0
- ncurses=6.4
- openssl=3.4.0
- pip=24.2
- python=3.8.20
- readline=8.2
- setuptools=75.1.0
- sqlite=3.45.3
- tk=8.6.14
- wheel=0.44.0
- xz=5.4.6
- zlib=1.2.13
- pip:
- absl-py==2.1.0
- accelerate==0.26.0
- aiohappyeyeballs==2.4.4
- aiohttp==3.10.11
- aiosignal==1.3.1
- annotated-types==0.7.0
- antlr4-python3-runtime==4.9.3
- async-timeout==5.0.1
- attrs==24.3.0
- cachetools==5.5.0
- certifi==2024.12.14
- charset-normalizer==3.4.1
- click==8.1.8
- cmake==3.31.2
- datasets==3.1.0
- dill==0.3.8
- docker-pycreds==0.4.0
- einops==0.6.1
- eval-type-backport==0.2.2
- evaluate==0.4.0
- filelock==3.16.1
- frozenlist==1.5.0
- fsspec==2024.9.0
- gitdb==4.0.11
- gitpython==3.1.43
- google-auth==2.37.0
- google-auth-oauthlib==1.0.0
- grpcio==1.68.1
- huggingface-hub==0.27.0
- idna==3.10
- importlib-metadata==8.5.0
- joblib==1.4.2
- markdown==3.7
- markupsafe==2.1.5
- multidict==6.1.0
- multiprocess==0.70.16
- ninja==1.11.1.3
- numpy==1.24.4
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- oauthlib==3.2.2
- omegaconf==2.3.0
- packaging==24.2
- pandas==2.0.3
- peft==0.3.0
- platformdirs==4.3.6
- propcache==0.2.0
- protobuf==3.20.3
- psutil==6.1.1
- pyarrow==17.0.0
- pyasn1==0.6.1
- pyasn1-modules==0.4.1
- pybind11==2.13.6
- pydantic==2.10.4
- pydantic-core==2.27.2
- python-dateutil==2.9.0.post0
- pytz==2024.2
- pyyaml==6.0.2
- regex==2024.11.6
- requests==2.32.3
- requests-oauthlib==2.0.0
- responses==0.18.0
- rsa==4.9
- safetensors==0.4.5
- scikit-learn==1.2.2
- scipy==1.10.1
- sentry-sdk==2.19.2
- setproctitle==1.3.4
- six==1.17.0
- smmap==5.0.1
- tensorboard==2.14.0
- tensorboard-data-server==0.7.2
- threadpoolctl==3.5.0
- tokenizers==0.13.3
- torch==1.13.1
- tqdm==4.67.1
- transformers==4.29.0
- typing-extensions==4.12.2
- tzdata==2024.2
- urllib3==2.2.3
- wandb==0.19.1
- werkzeug==3.0.6
- xxhash==3.5.0
- yarl==1.15.2
- zipp==3.20.2
prefix: /data/hexiong.yang/anaconda3/envs/dnabert2