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README.md
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This model is an object detection model trained with tensorflow object detection API, published with the paper [Edge Artificial Intelligence for real-time automatic quantification of filariasis in mobile microscopy](https://www.medrxiv.org/content/10.1101/2023.08.02.23293538v1)
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- Model description:
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- Developed by: Spotlab
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- Model type: SSD mobilenet v2
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- Classes:
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- Datasets:
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- Training set: 700 field of view images (100 magnification) from 85 samples with 1965 microfilarias
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- Validation set: 173 field of view images (100 magnification) from 30 samples with 328 microfilarias
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- Test set: 453 field of view images (100 magnification) from 30 samples with 328 microfilarias
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- On validation set: 88.17% precision, 91.62% recall, and 89.85% f1 score.
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- On test set: 94.14% precision, 91.90% recall, and 93.01% f1 score.
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Example detections
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![image/jpeg](https://cdn-uploads.huggingface.co/production/uploads/6509bcfc7e0d56c2717248be/t0rnWqTt69hbG4zPwimcu.jpeg)
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![image/jpeg](https://cdn-uploads.huggingface.co/production/uploads/6509bcfc7e0d56c2717248be/5i7H_eo_z7SFLAFrlL8-e.jpeg)
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---
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This model is an object detection model trained with tensorflow object detection API, published with the paper [Edge Artificial Intelligence for real-time automatic quantification of filariasis in mobile microscopy](https://www.medrxiv.org/content/10.1101/2023.08.02.23293538v1)
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- Developed by: Spotlab
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- Model type: SSD mobilenet v2
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- Classes: Microfilaria
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- Model input: image resized to 640 and normalized to with mean=127.5 and std = 127.5.
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- Datasets:
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- Training set: 700 field of view images (100 magnification) from 85 samples with 1965 microfilarias
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- Validation set: 173 field of view images (100 magnification) from 30 samples with 328 microfilarias
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- Test set: 453 field of view images (100 magnification) from 30 samples with 328 microfilarias
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- Performance:
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- On validation set: 88.17% precision, 91.62% recall, and 89.85% f1 score.
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- On test set: 94.14% precision, 91.90% recall, and 93.01% f1 score.
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Example detections
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![image/jpeg](https://cdn-uploads.huggingface.co/production/uploads/6509bcfc7e0d56c2717248be/t0rnWqTt69hbG4zPwimcu.jpeg)
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![image/jpeg](https://cdn-uploads.huggingface.co/production/uploads/6509bcfc7e0d56c2717248be/5i7H_eo_z7SFLAFrlL8-e.jpeg)
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The model is trained with the square inside the field of view instead with the full field of view. To ensure the model performace, use use this scale.
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You can create your own android app to run this model following this tutorial: (TensorFlow Lite Object Detection Android Demo
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)[https://github.com/tensorflow/examples/tree/master/lite/examples/object_detection/android]
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