Amelie Schreiber's picture

Amelie Schreiber

AmelieSchreiber

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https://mastodon.social/@OctoNoodle

AI & ML interests

Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.

Organizations

AmelieSchreiber's activity

published an article 4 months ago

Article

A New Era in Multistep Enzyme Design

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Oct 16, 2024

• 6

published an article 9 months ago

Article

A Guide to Designing New Functional Proteins and Improving Protein Function, Stability, and Diversity with Generative AI

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Jul 2, 2024

• 42

published an article 10 months ago

Article

RFDiffusion Potentials

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May 14, 2024

• 16

published an article about 1 year ago

Article

Predicting the Effects of Mutations on Protein Function with ESM-2

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Dec 13, 2023

• 11

published an article about 1 year ago

Article

Faster Persistent Homology Alignment and Protein Complex Clustering with ESM-2 and Persistence Landscapes

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Nov 30, 2023

• 1

published an article about 1 year ago

Article

Clustering Protein Complexes using Persistent Homology and Finetuning ESM-2 for PPI Network Prediction

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Nov 29, 2023

• 2

published an article about 1 year ago

Article

ESM-2 for Generating and Optimizing Peptide Binders for Target Proteins

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Nov 23, 2023

• 3

published an article about 1 year ago

Article

Persistent Homology Alignment (PHA): Replacing Multiple Sequence Alignments using ESM-2 and Persistent Homology

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Nov 15, 2023

published an article about 1 year ago

Article

In Silico Directed Evolution of Protein Sequences with ESM-2 and EvoProtGrad

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Nov 13, 2023

published an article about 1 year ago

Article

QLoRA for ESM-2 and Post Translational Modification Site Prediction

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Nov 11, 2023

• 3

published an article over 1 year ago

Article

Estimating the Intrinsic Dimension of Protein Sequence Embeddings using ESM-2

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Oct 18, 2023

• 3

published an article over 1 year ago

Article

Predicting Protein-Protein Interactions Using a Protein Language Model and Linear Sum Assignment

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Oct 15, 2023

• 9

published an article over 1 year ago

Article

ESMBind (ESMB) Ensemble Models

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Sep 22, 2023

• 4

published an article over 1 year ago

Article

ESMBind (ESMB): Low Rank Adaptation of ESM-2 for Protein Binding Site Prediction

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Sep 15, 2023

• 14